Open-Source tools in R for forestry and forest ecology

نویسندگان

چکیده

Forestry and forest ecology research potentially lags behind related fields such as ecology, biodiversity, conservation in the employment of open-source software solutions, specifically R programming language. A direct comparison last decade published literature from top 20 forestry journals shows that is utilized over 30% for yet less than 10% literature. Open-source computing environments, R, Python, Julia, increase visibility reproducibility scientific foster collaborations through removal proprietary restrictions. The lag adoption could be hindering collaboration, data sharing, reproducibility. Here we survey available packages language with specific utility forest-related research. We found more 100 which systematically categorized by category: community analysis; dendrochronology; mensuration inventory; hydrology; informatics/IoT; modeling; phenology; remote sensing. present worked examples a subgroup each category to demonstrate their potential utility. In these used sets our own selection. Additionally, collected this information into an metapackage, ForestAnalysisInR, Shiny-based solution allows users query have identified find those best suited analysis needs quick efficient way.

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Free and open source geographic information tools for landscape ecology

Geographic Information tools (GI tools) have become an essential component of research in landscape ecology. In this article we review the use of GIS (Geographic Information Systems) and GI tools in landscape ecology, with an emphasis on free and open source software (FOSS) projects. Specifically, we introduce the background and terms related to the free and open source software movement, then ...

متن کامل

Open Source Ecology

We are developing the Global Village Construction Set (GVCS) an open source, low-cost, high performance technological platform that allows for the easy, DIY (Do It Yourself) fabrication of the 50 different Industrial Machines that it takes to build a small, sustainable civilization with modern comforts.

متن کامل

Picante: R tools for integrating phylogenies and ecology

SUMMARY Picante is a software package that provides a comprehensive set of tools for analyzing the phylogenetic and trait diversity of ecological communities. The package calculates phylogenetic diversity metrics, performs trait comparative analyses, manipulates phenotypic and phylogenetic data, and performs tests for phylogenetic signal in trait distributions, community structure and species i...

متن کامل

Ecology and Dynamics of Open Source Communities

The goal of this chapter is to document the evolution of a portfolio of open source communities. These are communities formed around a set of related projects with common governance, which often produce artifacts shared among all projects. It helps to think of a portfolio of project communities as an ecology, in which the projects are mutually dependent, and there is both cross-project collabor...

متن کامل

Open-source tools for data mining.

With a growing volume of biomedical databases and repositories, the need to develop a set of tools to address their analysis and support knowledge discovery is becoming acute. The data mining community has developed a substantial set of techniques for computational treatment of these data. In this article, we discuss the evolution of open-source toolboxes that data mining researchers and enthus...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Forest Ecology and Management

سال: 2022

ISSN: ['0378-1127', '1872-7042']

DOI: https://doi.org/10.1016/j.foreco.2021.119813